PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65714.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 235aa    MW: 26289.7 Da    PI: 5.7357
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65714.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53191491129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lp+GfrFhPtdee+v++yL++k++++  ++  v+++v+i+++ePwdLp+ +k +ekew+fF+++d+ky+tg+r+nrat+sgyWkatgkdke+++   
  MLOC_65714.1  19 LPRGFRFHPTDEEVVTYYLTPKISNSYSSV-LVVPDVNINNTEPWDLPSLAKMGEKEWFFFVHKDRKYPTGTRTNRATRSGYWKATGKDKEIYRGkg 114
                   799************************998.78***************8888899**************************************9855 PP

           NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                    +  l+g+kktLvfy grap+gekt+Wvmheyrle
  MLOC_65714.1 115 rGAVLIGMKKTLVFYLGRAPSGEKTSWVMHEYRLE 149
                   45556****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-6016172IPR003441NAC domain
PROSITE profilePS5100557.15419172IPR003441NAC domain
PfamPF023656.1E-2920148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSDVTAVMGL RGEEPQLVLP RGFRFHPTDE EVVTYYLTPK ISNSYSSVLV VPDVNINNTE  60
PWDLPSLAKM GEKEWFFFVH KDRKYPTGTR TNRATRSGYW KATGKDKEIY RGKGRGAVLI  120
GMKKTLVFYL GRAPSGEKTS WVMHEYRLEG QLPHRLPRSA KDDWAVCRLF NKDSAANNAP  180
QMAPAADGGM EEEDPFAFLD EIFNSDDLLN NADLPILMDS PSGAVDFAGA PAPQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-5081784171NAC domain-containing protein 19
4dul_A1e-5081784171NAC domain-containing protein 19
1ut7_B1e-5081784171NO APICAL MERISTEM PROTEIN
1ut7_A1e-5081784171NO APICAL MERISTEM PROTEIN
1ut4_B1e-5081784171NO APICAL MERISTEM PROTEIN
1ut4_A1e-5081784171NO APICAL MERISTEM PROTEIN
3swp_D2e-5081787174NAC domain-containing protein 19
3swp_C2e-5081787174NAC domain-containing protein 19
3swp_B2e-5081787174NAC domain-containing protein 19
3swp_A2e-5081787174NAC domain-containing protein 19
3swm_D2e-5081787174NAC domain-containing protein 19
3swm_C2e-5081787174NAC domain-containing protein 19
3swm_B2e-5081787174NAC domain-containing protein 19
3swm_A2e-5081787174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0108301e-164AJ010830.1 Triticum sp. mRNA for GRAB2 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694971.11e-97PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FLJ23e-76NC100_ARATH; NAC domain-containing protein 100
TrEMBLM0Y4W21e-176M0Y4W2_HORVD; Uncharacterized protein
STRINGMLOC_65714.11e-176(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-77Arabidopsis NAC domain containing protein 87